Description
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
Home page
https://snakemake.readthedocs.io/
Documentation
https://snakemake.readthedocs.io/
License
snakemake is licensed under the MIT license
Usage
Use
module avail snakemake
to see which versions of snakemake are available. Use
module load snakemake/version
to get access to snakemake.
Checking job status
snakemake defaults to checking Slurm job status to a maximum of 10 times per second (--max-status-checks-per-second). Since Slurm schedules new jobs at a 30 second interval, this means an unnecessary high number of calls are made to the Slurm controller, which can negatively impact performance for all users.
Please reduce the job status check to once per minute or less by setting a fraction e.g.: "--max-status-checks-per-second 0.01".
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