SIR.m (MATLAB) for visualising the solution of the SIR model
phase_portrait.py (Python) for visualising velocity fields and orbits (thanks, Ludvik!)
Here is how to plot a quiver plot in Matlab for Example 4.2 (the same can be done in many other languages):
[X,Y] = meshgrid(linspace(-1,1,15)); U = Y+X.*(1-X.^2-Y.^2); V = -X+Y.*(1-X.^2-Y.^2); quiver(X,Y,U,V);
LotkaVolterra.m (MATLAB) for plotting the phase portrait of the Lotka–Volterra model with competing species.