MBV4230 - V?r 2005
Family name First name Date seminar Article
Molv?rsmyr Ann-Kristin onsdag 20. 04 Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad-Toh, K., Lander, E.S. and Kellis, M. (2005) Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature, 434, 338-345.
Bolding Karen onsdag 20. 04 Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600.
Klokk Tove Irene onsdag 20. 04 Lim, L.P., Lau, N.C., Garrett-Engele, P., Grimson, A., Schelter, J.M., Castle, J., Bartel, D.P., Linsley, P.S. and Johnson, J.M. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature, 433, 769-773.
Bj?rkmo Mona fredag 22. 04 Maile, T., Kwoczynski, S., Katzenberger, R.J., Wassarman, D.A. and Sauer, F. (2004) TAF1 activates transcription by phosphorylation of serine 33 in histone H2B. Science, 304, 1010-1014.
Ellefsrud Guro R?snes fredag 22. 04 Johnson, J.M., Edwards, S., Shoemaker, D. and Schadt, E.E. (2005) Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet, 21, 93-102.
Noer Agate fredag 22. 04 Kurdistani, S.K., Tavazoie, S. and Grunstein, M. (2004) Mapping global histone acetylation patterns to gene expression. Cell, 117, 721-733.
Andersen Ellen Dehnes mandag 25. 04 Shi, Y., Lan, F., Matson, C., Mulligan, P., Whetstine, J.R., Cole, P.A., Casero, R.A. and Shi, Y. (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell, 119, 941-953.
Foam Napoleon mandag 25. 04 Bernstein, B.E., Kamal, M., Lindblad-Toh, K., Bekiranov, S., Bailey, D.K., Huebert, D.J., McMahon, S., Karlsson, E.K., Kulbokas, E.J., 3rd, Gingeras, T.R. et al. (2005) Genomic maps and comparative analysis of histone modifications in human and mouse. Cell, 120, 169-181.
Timoskainen Sanna Kristiina mandag 25. 04 Simonsson, S. and Gurdon, J. (2004) DNA demethylation is necessary for the epigenetic reprogramming of somatic cell nuclei. Nat Cell Biol, 6, 984-990.
Stabell Marianne mandag 25. 04 Denman, R.B. (2005) PAD: the smoking gun behind arginine methylation signaling? Bioessays, 27, 242-246.
Dietzel Andreas Alexander onsdag 27. 04 Lo, W.S., Gamache, E.R., Henry, K.W., Yang, D., Pillus, L. and Berger, S.L. (2005) Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms. Embo J, 24, 997-1008.
Ekmark Merete onsdag 27. 04 Lee, H., Habas, R. and Abate-Shen, C. (2004) MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis. Science, 304, 1675-1678.
Joel Mrinal onsdag 27. 04 O'Sullivan, J.M., Tan-Wong, S.M., Morillon, A., Lee, B., Coles, J., Mellor, J. and Proudfoot, N.J. (2004) Gene loops juxtapose promoters and terminators in yeast. Nat Genet, 36, 1014-1018.
P?rez Aguilera Mois?s onsdag 27. 04 Lee, C.K., Shibata, Y., Rao, B., Strahl, B.D. and Lieb, J.D. (2004) Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet, 36, 900-905.
Raa Hilde Andersen onsdag 27. 04 Hofmann, W.A., Stojiljkovic, L., Fuchsova, B., Vargas, G.M., Mavrommatis, E., Philimonenko, V., Kysela, K., Goodrich, J.A., Lessard, J.L., Hope, T.J. et al. (2004) Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II. Nat Cell Biol, 6, 1094-1101.
Wang ling onsdag 27. 04 Schneider, R., Bannister, A.J., Myers, F.A., Thorne, A.W., Crane-Robinson, C. and Kouzarides, T. (2004) Histone H3 lysine 4 methylation patterns in higher eukaryotic genes. Nat Cell Biol, 6, 73-77.
Abesha Emnet onsdag 27. 04 West, S., Gromak, N. and Proudfoot, N.J. (2004) Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites. Nature, 432, 522-525.
Andresen Kim fredag 29. 04 Pray-Grant, M.G., Daniel, J.A., Schieltz, D., Yates, J.R., 3rd and Grant, P.A. (2005) Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. Nature, 433, 434-438.
Dahlen Hege fredag 29. 04 Hwang, E.S., Szabo, S.J., Schwartzberg, P.L. and Glimcher, L.H. (2005) T helper cell fate specified by kinase-mediated interaction of T-bet with GATA-3. Science, 307, 430-433.
Danielsen Stine Aske fredag 29. 04 Maeda, T., Hobbs, R.M., Merghoub, T., Guernah, I., Zelent, A., Cordon-Cardo, C., Teruya-Feldstein, J. and Pandolfi, P.P. (2005) Role of the proto-oncogene Pokemon in cellular transformation and ARF repression. Nature, 433, 278-285.
Tandstad Nora Martinussen fredag 29. 04 Yin, Y., Vafeados, D., Tao, Y., Yoshida, S., Asami, T. and Chory, J. (2005) A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell, 120, 249-259.
Stenvik Grethe Elisabeth fredag 29. 04 Liljegren, S.J., Roeder, A.H., Kempin, S.A., Gremski, K., Ostergaard, L., Guimil, S., Reyes, D.K. and Yanofsky, M.F. (2004) Control of fruit patterning in Arabidopsis by INDEHISCENT. Cell, 116, 843-853.
Agustsdottir Silja mandag 02. 05 Senger, K., Armstrong, G.W., Rowell, W.J., Kwan, J.M., Markstein, M. and Levine, M. (2004) Immunity regulatory DNAs share common organizational features in Drosophila. Mol Cell, 13, 19-32.
Johansen Ida Beitnes mandag 02. 05 Berkes, C.A., Bergstrom, D.A., Penn, B.H., Seaver, K.J., Knoepfler, P.S. and Tapscott, S.J. (2004) Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential. Mol Cell, 14, 465-477.
Syvertsen Berit Lyng mandag 02. 05 Secombe, J., Pierce, S.B. and Eisenman, R.N. (2004) Myc: a weapon of mass destruction. Cell, 117, 153-156.
Tronchoni-Leon Jordi mandag 02. 05 Chen, H.T. and Hahn, S. (2004) Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC. Cell, 119, 169-180.
Landsverk Helga mandag 02. 05 Impey, S., McCorkle, S.R., Cha-Molstad, H., Dwyer, J.M., Yochum, G.S., Boss, J.M., McWeeney, S., Dunn, J.J., Mandel, G. and Goodman, R.H. (2004) Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions. Cell, 119, 1041-1054.
Mathisen Gro mandag 02. 05 Leung, T.H., Hoffmann, A. and Baltimore, D. (2004) One nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers. Cell, 118, 453-464.
Bones Inger Louise tirsdag 03. 05 Wang, H., Wang, L., Erdjument-Bromage, H., Vidal, M., Tempst, P., Jones, R.S. and Zhang, Y. (2004) Role of histone H2A ubiquitination in Polycomb silencing. Nature, 431, 873-878.
Hussain Mujtaba tirsdag 03. 05 Panne, D., Maniatis, T. and Harrison, S.C. (2004) Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer. Embo J, 23, 4384-4393.
M?ller Marie tirsdag 03. 05 Steffan, J.S., Agrawal, N., Pallos, J., Rockabrand, E., Trotman, L.C., Slepko, N., Illes, K., Lukacsovich, T., Zhu, Y.Z., Cattaneo, E. et al. (2004) SUMO modification of Huntingtin and Huntington's disease pathology. Science, 304, 100-104.
Wieman Heather Liegh tirsdag 03. 05 Yuan, Z.L., Guan, Y.J., Chatterjee, D. and Chin, Y.E. (2005) Stat3 dimerization regulated by reversible acetylation of a single lysine residue. Science, 307, 269-273.
Wierzbicka Paula tirsdag 03. 05 Krylova, I.N., Sablin, E.P., Moore, J., Xu, R.X., Waitt, G.M., MacKay, J.A., Juzumiene, D., Bynum, J.M., Madauss, K., Montana, V. et al. (2005) Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1. Cell, 120, 343-355.
Kleveland Ellen tirsdag 03. 05 Lin, J., Yang, R., Tarr, P.T., Wu, P.H., Handschin, C., Li, S., Yang, W., Pei, L., Uldry, M., Tontonoz, P. et al. (2005) Hyperlipidemic effects of dietary saturated fats mediated through PGC-1beta coactivation of SREBP. Cell, 120, 261-273.
Krohn Marit onsdag 04. 05 Carreira, S., Goodall, J., Aksan, I., La Rocca, S.A., Galibert, M.D., Denat, L., Larue, L. and Goding, C.R. (2005) Mitf cooperates with Rb1 and activates p21Cip1 expression to regulate cell cycle progression. Nature, 433, 764-769.
Landmark Hege Benedicte Knutsen onsdag 04. 05 Sui, G., Affar el, B., Shi, Y., Brignone, C., Wall, N.R., Yin, P., Donohoe, M., Luke, M.P., Calvo, D. and Grossman, S.R. (2004) Yin Yang 1 is a negative regulator of p53. Cell, 117, 859-872.
Moen Lars Fredrik onsdag 04. 05 Vakoc, C.R., Letting, D.L., Gheldof, N., Sawado, T., Bender, M.A., Groudine, M., Weiss, M.J., Dekker, J. and Blobel, G.A. (2005) Proximity among Distant Regulatory Elements at the beta-Globin Locus Requires GATA-1 and FOG-1. Mol Cell, 17, 453-462.
Sakalauskaite Ausra onsdag 04. 05 Westover, K.D., Bushnell, D.A. and Kornberg, R.D. (2004) Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell, 119, 481-489.
Zarins Kristina Victorija onsdag 04. 05 Osborne, C.S., Chakalova, L., Brown, K.E., Carter, D., Horton, A., Debrand, E., Goyenechea, B., Mitchell, J.A., Lopes, S., Reik, W. et al. (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet, 36, 1065-1071.
Barragan Polania Ana onsdag 04. 05 Bond, G.L., Hu, W., Bond, E.E., Robins, H., Lutzker, S.G., Arva, N.C., Bargonetti, J., Bartel, F., Taubert, H., Wuerl, P. et al. (2004) A single nucleotide polymorphism in the MDM2 promoter attenuates the p53 tumor suppressor pathway and accelerates tumor formation in humans. Cell, 119, 591-602.